# API Reference

## Command-line Entrypoints

### `runXstack`
```{eval-rst}
.. argparse::
   :module: Xstack_scripts.Xstack_autoscript
   :func: build_parser
   :prog: runXstack
```

### `clear_rf_files`
```{eval-rst}
.. argparse::
   :module: Xstack_scripts.clear_rf_files
   :func: build_parser
   :prog: clear_rf_files
```

## Main Runner

```{eval-rst}
.. automodule:: Xstack.Xstack
   :members:
   :undoc-members:
   :show-inheritance:
```

<!-- ## Configuration

```{eval-rst}
.. automodule:: Xstack.config
   :members:
   :undoc-members:
``` -->

## Utility Modules

```{eval-rst}
.. automodule:: Xstack.utils.pi
   :members:
   :undoc-members:
```

```{eval-rst}
.. automodule:: Xstack.utils.rsp
   :members:
   :undoc-members:
```

```{eval-rst}
.. automodule:: Xstack.utils.fene
   :members:
   :undoc-members:
```

```{eval-rst}
.. automodule:: Xstack.utils.misc
   :members:
   :undoc-members:
```

```{eval-rst}
.. automodule:: Xstack.utils.model
   :members:
   :undoc-members:
```

```{eval-rst}
.. automodule:: Xstack.utils.random
   :members:
   :undoc-members:
```

```{eval-rst}
.. automodule:: Xstack.utils.logger
   :members:
   :undoc-members:
```

## Visualization Helpers

```{eval-rst}
.. automodule:: Xstack.visual.view
   :members:
   :undoc-members:
```